Basic Information
Locus ID:
gene-BS78_06G207200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 36315628 | 36317232 | + | gene-BS78_06G207200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 59,110.51 Da | 53.45 | 82.90 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 46 | 162 | 1.39538E-15 | - |
| Pfam | PF01909 | Nucleotidyltransferase domain | 82 | 133 | 1.0E-6 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 10 | 354 | 2.2E-99 | IPR007012 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 358 | 417 | 4.6E-8 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 10 | 201 | 6.54E-41 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 357 | 489 | 1.59E-26 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 203 | 355 | 2.07E-56 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 357 | 479 | 8.1E-21 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 39 | 196 | 1.1E-136 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 10 | 353 | 1.1E-136 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 2 | 531 | 1.0E-178 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 534 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 520 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_002447008.1 | nuclear poly(A) polymerase 4 [Sorghum bicolor] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1B6PMV7 | Poly(A) polymerase OS=Sorghum bicolor OX=4558 GN=SORBI_3006G195600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology