halophFGD

Basic Information

Locus ID: gene-BS78_06G201700

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr6	35716324	35717520	+	gene-BS78_06G201700

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.27	43,360.03 Da	39.06	90.75	-0.01

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	8	51	8.8E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	8	64	3.01E-13	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	2	95	1.6E-5	-
SMART	SM00256	fbox_2	6	49	0.0081	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_025819368.1	uncharacterized protein LOC112895608 [Panicum hallii]	0
TrEMBL	A0A8T0SIM9	F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG206700 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	AH03.132, CH03.202
Poaceae	Paspalum vaginatum	1	gene-BS78_06G201700