Basic Information
Locus ID:
gene-BS78_06G197400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35401921 | 35403292 | - | gene-BS78_06G197400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 25,349.59 Da | 44.52 | 80.52 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 176 | 223 | 2.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 175 | 228 | 1.32E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 229 | 1.2E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 176 | 222 | 0.002 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 176 | 223 | 11.471321 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004976587.1 | uncharacterized protein LOC101763053 [Setaria italica] | 0 |
| TrEMBL | A0A368RXZ3 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_7G210400v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g32340 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2041, BH09.2198, CH09.2347 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0306430, gene-QOZ80_4BG0337430 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045732, gene-QYE76_064127 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g49170.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G197400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703590, Pt_Chr0703595 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr25G004870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G677900 |
| Poaceae | Triticum aestivum | 2 | TraesCS2B02G413100.1.cds1, TraesCS2D02G392600.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb073040_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-5640 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g21839 |