Basic Information
Locus ID:
gene-BS78_06G195000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 35226225 | 35231357 | + | gene-BS78_06G195000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 35,338.51 Da | 49.73 | 63.64 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 2.9E-79 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 5 | 107 | 3.2E-42 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 7.4E-35 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 224 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_008667953.1 | uncharacterized protein LOC100282176 isoform X1 [Zea mays] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A2T7CYZ7 | Ubiquitin fusion degradation protein 1 homolog OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G254400 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology