Basic Information
Locus ID:
gene-BS78_06G168500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 33211157 | 33214876 | - | gene-BS78_06G168500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 28,686.51 Da | 59.62 | 73.86 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 41 | 95 | 3.78376E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 43 | 93 | 6.9E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 106 | 1.44E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 166 | 1.4E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 43 | 93 | 1.2E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 43 | 94 | 12.533537 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 58 | 67 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 152 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_025824831.1 | E3 ubiquitin-protein ligase RMA1H1-like [Panicum hallii] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5WDM0 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0003542 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology