Basic Information
Locus ID:
gene-BS78_06G167600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 33165083 | 33171140 | + | gene-BS78_06G167600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 86,465.75 Da | 65.55 | 65.45 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 314 | 633 | 1.96222E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 420 | 455 | 2.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 315 | 347 | 5.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 594 | 632 | 0.033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 461 | 498 | 5.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 314 | 633 | 1.91E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 301 | 398 | 2.0E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 402 | 680 | 8.8E-47 | IPR015943 |
| SMART | SM00320 | WD40_4 | 501 | 539 | 4.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 555 | 591 | 18.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 309 | 348 | 1.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 459 | 498 | 1.4E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 418 | 456 | 8.5E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 592 | 633 | 0.24 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 316 | 357 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 425 | 465 | 13.415834 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 316 | 350 | 12.051043 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 465 | 501 | 10.390142 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 465 | 507 | 12.680634 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 425 | 459 | 10.15287 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 335 | 349 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 443 | 457 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 485 | 499 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 335 | 349 | 1.8E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 734 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 238 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 227 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025824037.1 | WD repeat-containing protein 44-like [Panicum hallii] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7CXU4 | WD_REPEATS_REGION domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_7G221500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology