Basic Information
Locus ID:
gene-BS78_06G136700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 30669098 | 30673020 | + | gene-BS78_06G136700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 62,267.67 Da | 48.28 | 102.56 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 62 | 98 | 6.6E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 61 | 111 | 8.63E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 225 | 411 | 2.28E-9 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 62 | 103 | 9.6E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 484 | 4.4E-9 | IPR032675 |
| SMART | SM00256 | fbox_2 | 66 | 106 | 0.0035 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 60 | 113 | 9.709425 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38392.1 | - | 0 |
| RefSeq | XP_002446938.1 | F-box/FBD/LRR-repeat protein At5g22660 [Sorghum bicolor] | 0 |
| Q84W80 | F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana OX=3702 GN=At3g03360 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TVW1 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_39067 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | AH09.1354 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G454500, gene-BS78_06G136700, gene-BS78_K067800 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0307229 |