Basic Information
Locus ID:
gene-BS78_06G134800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
No apical meristem (NAM) protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 30507719 | 30513383 | - | gene-BS78_06G134800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 43,885.12 Da | 47.21 | 68.87 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 84 | 227 | 1.7E-15 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 69 | 246 | 1.57E-30 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 93 | 251 | 1.8E-22 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 83 | 246 | 25.916071 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_012703093.2 | SUPPRESSOR OF GAMMA RESPONSE 1 [Setaria italica] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368RVE7 | NAC domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_7G137600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology