Basic Information
Locus ID:
gene-BS78_06G130900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 30256375 | 30261338 | + | gene-BS78_06G130900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 82,220.23 Da | 37.04 | 82.71 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 39 | 337 | 2.40543E-174 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 354 | 654 | 1.09336E-174 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 359 | 650 | 1.7E-43 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 38 | 337 | 2.33E-38 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 353 | 654 | 3.92E-51 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 352 | 655 | 3.7E-56 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 38 | 337 | 2.7E-32 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 39 | 338 | 31.414295 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 354 | 655 | 39.656197 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_002446646.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Sorghum bicolor] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A811QVQ0 | glycerophosphodiester phosphodiesterase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS46703 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology