Basic Information
Locus ID:
gene-BS78_06G107600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 28379637 | 28381070 | + | gene-BS78_06G107600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 30,097.50 Da | 55.01 | 80.03 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 123 | 166 | 1.56634E-20 | - |
| Pfam | PF13639 | Ring finger domain | 123 | 166 | 3.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 115 | 172 | 1.99E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 172 | 8.3E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 165 | 2.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 166 | 12.341748 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | NP_001141538.1 | putative RING zinc finger domain superfamily protein [Zea mays] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5VJJ9 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0013684 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology