Basic Information
Locus ID:
gene-BS78_06G074100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
AFB3
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 24388097 | 24393146 | - | gene-BS78_06G074100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 64,356.61 Da | 45.53 | 90.52 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 1 | 41 | 3.4E-17 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 8.7E-24 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 20 | 535 | 6.28E-36 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 2.8E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 575 | 5.2E-177 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 333 | 365 | 720.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 50.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.0076 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 230.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 220.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 500 | 130.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 12.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 54.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_025824574.1 | transport inhibitor response 1-like protein Os04g0395600 [Panicum hallii] | 0 |
| Q7XVM8 | Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0395600 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6B7KXD9 | Auxin signaling F-box protein OS=Echinochloa crus-galli var. zelayensis OX=2053281 GN=AFB2 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology