Basic Information
Locus ID:
gene-BS78_06G066100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 23164787 | 23167980 | - | gene-BS78_06G066100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.39 | 38,014.04 Da | 62.92 | 73.57 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 302 | 342 | 8.7E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 302 | 346 | 8.89E-10 | - |
| SUPERFAMILY | SSF81901 | HCP-like | 109 | 226 | 5.49E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 42 | 95 | 8.5E-6 | IPR036047 |
| Gene3D | G3DSA:6.10.140.2220 | - | 288 | 350 | 4.6E-11 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 85 | 279 | 4.5E-14 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 300 | 342 | 10.95451 | IPR002893 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_048557048.1 | F-box protein At5g50450-like [Triticum urartu] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8R7TI22 | MYND-type domain-containing protein OS=Triticum urartu OX=4572 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology