Basic Information
Locus ID:
gene-BS78_06G060100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glycosyl hydrolases family 18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 21663074 | 21664963 | + | gene-BS78_06G060100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 48,181.43 Da | 44.54 | 88.89 | 0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 59 | 379 | 3.6E-47 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 278 | 350 | 1.83E-11 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 43 | 382 | 3.04E-47 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 277 | 350 | 8.5E-69 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 59 | 379 | 8.5E-69 | - |
| SMART | SM00636 | 2g34 | 41 | 379 | 1.9E-50 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 40 | 396 | 44.594154 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002447644.1 | chitinase-3-like protein 1 [Sorghum bicolor] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | C5YE78 | GH18 domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3006G044200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology