Basic Information
Locus ID:
gene-BS78_06G049000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 15408122 | 15430758 | + | gene-BS78_06G049000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 204,520.28 Da | 49.52 | 88.01 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1475 | 1892 | 8.41901E-123 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1523 | 1897 | 8.6E-82 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 180 | 640 | 3.11E-40 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1466 | 1890 | 8.24E-98 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1416 | 1660 | 1.5E-43 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1772 | 1895 | 7.1E-33 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 164 | 643 | 1.5E-56 | IPR011989 |
| SMART | SM00119 | hect_3 | 1489 | 1897 | 9.4E-91 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1499 | 1897 | 59.35799 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 967 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 659 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 969 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1020 | 1058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1029 | 1052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1150 | 1170 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_002447553.2 | E3 ubiquitin-protein ligase UPL3 [Sorghum bicolor] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1B6PJT3 | HECT-type E3 ubiquitin transferase OS=Sorghum bicolor OX=4558 GN=SORBI_3006G032300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology