Basic Information
Locus ID:
gene-BS78_06G018300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 3031007 | 3032282 | + | gene-BS78_06G018300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 33,884.26 Da | 23.90 | 85.88 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 66 | 271 | 9.6E-60 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 61 | 305 | 5.37E-47 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 58 | 232 | 9.1E-49 | IPR016138 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 233 | 308 | 5.2E-32 | IPR016139 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 118 | 133 | 6.7E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 221 | 241 | 6.7E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 68 | 81 | 6.7E-6 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039772178.1 | ribosome-inactivating protein-like [Panicum virgatum] | 0 |
| P28522 | Ribosome-inactivating protein OS=Zea mays OX=4577 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0QAS1 | rRNA N-glycosylase OS=Panicum virgatum OX=38727 GN=PVAP13_7KG024832 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology