Basic Information
Locus ID:
gene-BS78_06G004300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 757926 | 760792 | + | gene-BS78_06G004300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.31 | 51,197.71 Da | 73.08 | 79.45 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 212 | 261 | 2.39116E-12 | - |
| Pfam | PF12906 | RING-variant domain | 212 | 260 | 7.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 264 | 2.07E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 268 | 8.9E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 211 | 261 | 1.6E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 204 | 267 | 17.604366 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 61 | 75 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 462 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 202 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025824979.1 | probable E3 ubiquitin-protein ligase MARCH10 isoform X1 [Panicum hallii] | 0 |
| TrEMBL | A0A811QYQ1 | RING-CH-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS44899 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology