Basic Information
Locus ID:
gene-BS78_05G282000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
DNA recombination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 56892487 | 56896531 | - | gene-BS78_05G282000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 23,686.88 Da | 34.10 | 74.93 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 58 | 194 | 1.23432E-34 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 77 | 194 | 1.9E-19 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 53 | 196 | 8.91E-30 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 40 | 203 | 6.2E-33 | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G06510.2 | replication protein A 1A. Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I. | 0 |
| RefSeq | XP_039789813.1 | replication protein A 70 kDa DNA-binding subunit B-like [Panicum virgatum] | 0 |
| TrEMBL | A0A8T0URY7 | Replication protein A subunit OS=Panicum virgatum OX=38727 GN=PVAP13_3KG088000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology