Basic Information
Locus ID:
gene-BS78_05G281800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Disease resistance protein RPP13
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 56860638 | 56876585 | - | gene-BS78_05G281800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 227,239.02 Da | 42.89 | 96.36 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18052 | Rx N-terminal domain | 11 | 89 | 6.1E-9 | IPR041118 |
| Pfam | PF00931 | NB-ARC domain | 181 | 400 | 6.4E-36 | IPR002182 |
| Pfam | PF00931 | NB-ARC domain | 1225 | 1467 | 2.5E-31 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1224 | 1481 | 4.99E-45 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 1609 | 1951 | 2.72E-15 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 180 | 488 | 2.06E-45 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 584 | 947 | 9.86E-14 | - |
| Gene3D | G3DSA:1.10.8.430 | - | 1378 | 1466 | 9.4E-11 | IPR042197 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 574 | 951 | 3.2E-15 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 470 | 564 | 3.8E-8 | IPR036388 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1597 | 1959 | 9.6E-14 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 334 | 412 | 1.2E-6 | IPR042197 |
| Gene3D | G3DSA:1.20.5.4130 | - | 1075 | 1181 | 1.0E-10 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 10 | 126 | 2.8E-11 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 1467 | 1541 | 2.6E-6 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 1213 | 1369 | 1.6E-21 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 172 | 324 | 1.1E-26 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1236 | 1396 | 0.67 | IPR003593 |
| SMART | SM00382 | AAA_5 | 198 | 336 | 0.23 | IPR003593 |
| PRINTS | PR00364 | Disease resistance protein signature | 1315 | 1329 | 1.2E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 1640 | 1656 | 1.2E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 1413 | 1427 | 1.2E-12 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 1239 | 1254 | 1.2E-12 | - |
| Coils | Coil | Coil | 1125 | 1145 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46730.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_037461036.1 | uncharacterized protein LOC119331959 isoform X2 [Triticum dicoccoides] | 0 |
| Q2R8L1 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0HZV6 | AAA domain-containing protein OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology