Basic Information
Locus ID:
gene-BS78_05G272500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 55265466 | 55272435 | + | gene-BS78_05G272500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 78,373.73 Da | 36.93 | 71.35 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 294 | 323 | 3.29228E-7 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 404 | 693 | 2.0E-39 | IPR001245 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 27 | 86 | 9.8E-8 | IPR025287 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 396 | 698 | 1.48E-59 | IPR011009 |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 267 | 340 | 2.9E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 500 | 708 | 2.5E-47 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 377 | 498 | 2.3E-18 | - |
| SMART | SM00179 | egfca_6 | 294 | 338 | 5.0E-5 | IPR001881 |
| SMART | SM00220 | serkin_6 | 401 | 700 | 1.1E-25 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 401 | 700 | 30.548534 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 294 | 338 | 11.306347 | IPR000742 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 407 | 432 | - | IPR017441 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 294 | 321 | - | IPR018097 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 312 | 323 | - | IPR000152 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 455 | - | - |
| Coils | Coil | Coil | 686 | 711 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21270.1 | wall-associated kinase 2. cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. | 0 |
| RefSeq | XP_004979631.1 | wall-associated receptor kinase 2 [Setaria italica] | 0 |
| Q9LMP1 | Wall-associated receptor kinase 2 OS=Arabidopsis thaliana OX=3702 GN=WAK2 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZP23 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH04.2283, BH04.2243, CH03.2334, CH04.2670 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_9AG0692750, gene-QOZ80_9AG0692840 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0103900.1 |
| Poaceae | Oryza coarctata | 4 | Oco08G001920, Oco08G001950, Oco18G001800, Oco21G009920 |
| Poaceae | Oryza sativa | 10 | ChrSy.fgenesh.mRNA.14, LOC_Os04g14304.1, LOC_Os11g46860.1 ... |
| Poaceae | Paspalum vaginatum | 17 | gene-BS78_05G102300, gene-BS78_05G242700, gene-BS78_K099700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205048, Pt_Chr0205049, Pt_Chr0205050 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G013790, Chr0G006760, Chr31G008600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G159400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG008000, gene_TRIDC2AG008010 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G071800.1, TraesCS2A02G071900.1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18470, nbis-gene-18479, nbis-gene-37655 |