Basic Information
Locus ID:
gene-BS78_05G271400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 55089118 | 55099599 | + | gene-BS78_05G271400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 78,647.41 Da | 33.72 | 81.90 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 317 | 361 | 1.83553E-7 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 435 | 705 | 3.1E-40 | IPR001245 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 40 | 98 | 6.9E-9 | IPR025287 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 413 | 707 | 1.75E-63 | IPR011009 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 335 | 369 | 6.1E-5 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 509 | 714 | 3.0E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 408 | 508 | 2.6E-20 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 272 | 366 | 6.1E-8 | - |
| SMART | SM00181 | egf_5 | 320 | 367 | 0.0014 | IPR000742 |
| SMART | SM00181 | egf_5 | 262 | 316 | 85.0 | IPR000742 |
| SMART | SM00220 | serkin_6 | 432 | 711 | 3.9E-22 | IPR000719 |
| SMART | SM00179 | egfca_6 | 317 | 367 | 3.3E-8 | IPR001881 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 432 | 708 | 30.74641 | IPR000719 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 317 | 367 | 12.527842 | IPR000742 |
| ProSitePatterns | PS01186 | EGF-like domain signature 2. | 352 | 366 | - | IPR000742 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 438 | 460 | - | IPR017441 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 343 | 354 | - | IPR000152 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21250.1 | cell wall-associated kinase. cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component such as oligogalacturonides. | 0 |
| RefSeq | XP_034607001.1 | wall-associated receptor kinase 1-like [Setaria viridis] | 0 |
| Q39191 | Wall-associated receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=WAK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A4V6D3H1 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G250466v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH04.2283, BH04.2243, CH03.2334, CH04.2670 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_9AG0692750, gene-QOZ80_9AG0692840 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0103900.1 |
| Poaceae | Oryza coarctata | 4 | Oco08G001920, Oco08G001950, Oco18G001800, Oco21G009920 |
| Poaceae | Oryza sativa | 10 | ChrSy.fgenesh.mRNA.14, LOC_Os04g14304.1, LOC_Os11g46860.1 ... |
| Poaceae | Paspalum vaginatum | 17 | gene-BS78_05G102300, gene-BS78_05G242700, gene-BS78_K099700 ... |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0205048, Pt_Chr0205049, Pt_Chr0205050 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr07G013790, Chr0G006760, Chr31G008600 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G159400 |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG008000, gene_TRIDC2AG008010 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G071800.1, TraesCS2A02G071900.1 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-18470, nbis-gene-18479, nbis-gene-37655 |