Basic Information
Locus ID:
gene-BS78_05G267000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
NB-ARC domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 54306382 | 54356878 | - | gene-BS78_05G267000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 201,216.80 Da | 47.55 | 93.73 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 1454 | 1710 | 1.2E-65 | IPR000719 |
| Pfam | PF00931 | NB-ARC domain | 177 | 419 | 2.9E-30 | IPR002182 |
| Pfam | PF18052 | Rx N-terminal domain | 11 | 94 | 1.2E-10 | IPR041118 |
| SUPERFAMILY | SSF52058 | L domain-like | 479 | 869 | 2.21E-15 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1449 | 1771 | 4.18E-82 | IPR011009 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 167 | 431 | 7.91E-45 | IPR027417 |
| Gene3D | G3DSA:2.60.40.2700 | - | 1218 | 1296 | 3.6E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1451 | 1747 | 1.0E-80 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 11 | 123 | 5.2E-12 | - |
| Gene3D | G3DSA:1.10.10.10 | - | 411 | 504 | 7.5E-10 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 160 | 323 | 4.1E-27 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 505 | 760 | 4.3E-11 | IPR032675 |
| SMART | SM00220 | serkin_6 | 1452 | 1710 | 3.7E-91 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1452 | 1710 | 48.767258 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1574 | 1586 | - | IPR008271 |
| PRINTS | PR00364 | Disease resistance protein signature | 196 | 211 | 1.6E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 720 | 736 | 1.6E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 268 | 282 | 1.6E-11 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 365 | 379 | 1.6E-11 | - |
| Coils | Coil | Coil | 1097 | 1149 | - | - |
| Coils | Coil | Coil | 34 | 54 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66850.2 | - | 0 |
| RefSeq | XP_039801367.1 | disease resistance protein RGA5-like isoform X4 [Panicum virgatum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U2L7 | NB-ARC domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_33748 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology