Basic Information
Locus ID:
gene-BS78_05G266500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 54215121 | 54224132 | - | gene-BS78_05G266500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 115,669.14 Da | 46.22 | 104.03 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 976 | 1028 | 1.2E-8 | IPR000719 |
| Pfam | PF00931 | NB-ARC domain | 164 | 395 | 1.6E-32 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 146 | 408 | 2.21E-45 | IPR027417 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 972 | 1028 | 5.05E-11 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 521 | 768 | 6.28E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 487 | 827 | 1.5E-13 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 962 | 1028 | 1.2E-9 | - |
| Gene3D | G3DSA:1.10.8.430 | - | 305 | 392 | 3.6E-8 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 138 | 299 | 3.3E-25 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 393 | 485 | 6.1E-9 | IPR036388 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 841 | 1028 | 9.064854 | IPR000719 |
| PRINTS | PR00364 | Disease resistance protein signature | 168 | 183 | 2.8E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 244 | 258 | 2.8E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 585 | 601 | 2.8E-13 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 342 | 356 | 2.8E-13 | - |
| Coils | Coil | Coil | 648 | 668 | - | - |
| Coils | Coil | Coil | 115 | 135 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G50950.1 | HOPZ-ACTIVATED RESISTANCE 1. | 0 |
| RefSeq | XP_039801363.1 | disease resistance protein RGA5-like isoform X1 [Panicum virgatum] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6VE86 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G281900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology