Basic Information
Locus ID:
gene-BS78_05G256200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 52719024 | 52722569 | - | gene-BS78_05G256200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.45 | 70,307.23 Da | 35.91 | 76.82 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 220 | 417 | 4.20629E-98 | - |
| CDD | cd18794 | SF2_C_RecQ | 418 | 551 | 2.9544E-65 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 435 | 540 | 7.1E-18 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 554 | 623 | 1.0E-12 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 228 | 397 | 2.3E-15 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 266 | 561 | 2.29E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 418 | 625 | 1.9E-60 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 185 | 417 | 8.1E-83 | IPR027417 |
| SMART | SM00487 | ultradead3 | 222 | 426 | 6.9E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 460 | 542 | 7.8E-24 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 220 | 624 | 2.2E-152 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 432 | 582 | 19.023705 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 234 | 410 | 20.619223 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 349 | 358 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 190 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_004980856.3 | ATP-dependent DNA helicase Q-like 1 [Setaria italica] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A368SAP1 | ATP-dependent DNA helicase OS=Setaria italica OX=4555 GN=SETIT_8G229300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology