Basic Information
Locus ID:
gene-BS78_05G248800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Wall-associated receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 51749702 | 51757575 | - | gene-BS78_05G248800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 82,617.10 Da | 42.80 | 77.83 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 356 | 389 | 1.12675E-5 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 356 | 386 | 4.9E-6 | IPR001881 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 58 | 127 | 4.2E-7 | IPR025287 |
| Pfam | PF00069 | Protein kinase domain | 477 | 701 | 2.2E-26 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 458 | 703 | 8.75E-54 | IPR011009 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 356 | 390 | 9.75E-7 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 359 | 391 | 2.0E-7 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 445 | 553 | 5.3E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 554 | 722 | 3.6E-33 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 315 | 358 | 1.6E-5 | - |
| SMART | SM00181 | egf_5 | 304 | 355 | 0.37 | IPR000742 |
| SMART | SM00220 | serkin_6 | 477 | 706 | 2.7E-12 | IPR000719 |
| SMART | SM00181 | egf_5 | 359 | 398 | 3.0 | IPR000742 |
| SMART | SM00179 | egfca_6 | 356 | 398 | 3.9E-6 | IPR001881 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 477 | 711 | 25.502695 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 582 | 594 | - | IPR008271 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 372 | 383 | - | IPR000152 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 356 | 381 | - | IPR018097 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 483 | 508 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 721 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 731 | 754 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21230.1 | wall associated kinase 5. encodes a wall-associated kinase | 0 |
| RefSeq | XP_012702453.2 | wall-associated receptor kinase 2 [Setaria italica] | 0 |
| Q9LMN7 | Wall-associated receptor kinase 5 OS=Arabidopsis thaliana OX=3702 GN=WAK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A368RJV4 | Protein kinase domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G094100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0688840 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_05G248600, gene-BS78_05G248800, gene-BS78_K280400 ... |
| Poaceae | Zea mays | 1 | Zm00001eb262530_P001 |