halophFGD

Basic Information

Locus ID: gene-BS78_05G244700

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: PPR repeat family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	51065330	51066243	+	gene-BS78_05G244700

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.20	24,174.80 Da	33.74	73.86	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_022678522.1	uncharacterized protein LOC101769086 isoform X2 [Setaria italica]	0
TrEMBL	A0A4U6T7J8	WD40-like Beta Propeller Repeat OS=Setaria viridis OX=4556 GN=SEVIR_9G429766v2 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Aizoaceae	Mesembryanthemum crystallinum	11	gene_12213, gene_12215, gene_12216, gene_7196, gene_7197 ... gene_7198, gene_7199, gene_7200, gene_7201, gene_7202, gene_7203
Amaranthaceae	Atriplex hortensis	1	Ah031551
Amaranthaceae	Beta vulgaris	6	BVRB_4g089400, BVRB_4g089410, BVRB_4g089450, BVRB_4g089460 ... BVRB_4g089520, BVRB_4g089530
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg18938, Sbi_jg18940, Sbi_jg37394, Sbi_jg37395 ... Sbi_jg37396
Amaranthaceae	Salicornia europaea	2	Seu_jg5232, Seu_jg5234
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00017415, GOSA_00017418
Amaranthaceae	Suaeda glauca	7	Sgl23475, Sgl28602, Sgl54511, Sgl54513, Sgl59850, Sgl71538 ... Sgl75116
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000005844, gene:ENSEOMG00000021703 ... gene:ENSEOMG00000025400, gene:ENSEOMG00000033699
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.4AG0023640, CQ.Regalona.r1.5BG0017600 ... CQ.Regalona.r1.7AG0023140, CQ.Regalona.r1.7AG0023150
Apiaceae	Apium graveolens	9	Ag10G01555, Ag3G01091, Ag3G01092, Ag7G02070, Ag7G02072 ... Ag7G02076, Ag7G02077, Ag7G02078, Ag7G02080
Asparagaceae	Asparagus officinalis	2	AsparagusV1_07.2391.V1.1, AsparagusV1_Unassigned.198.V1.1
Poaceae	Echinochloa crus-galli	12	AH04.434, AH05.523, AH05.525, AH08.356, AH08.708, BH05.577 ... BH05.579, CH04.475, CH05.654, CH05.656, Contig1934.2, Contig522.11
Poaceae	Eleusine coracana subsp. coracana	14	gene-QOZ80_4BG0352250, gene-QOZ80_6AG0505730 ... gene-QOZ80_6AG0517360, gene-QOZ80_6BG0457770, gene-QOZ80_6BG0469340, gene-QOZ80_6BG0469350, gene-QOZ80_9AG0677600, gene-QOZ80_9AG0681550, gene-QOZ80_9AG0681610, gene-QOZ80_9AG0681850, gene-QOZ80_9AG0686610, gene-QOZ80_9BG0701290, gene-QOZ80_9BG0706450, gene-QOZ80_9BG0712830
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.4HG0381190.1.CDS1 ... HORVU.MOREX.r3.5HG0420780.1, HORVU.MOREX.r3.7HG0635330.2, HORVU.MOREX.r3.7HG0635370.1
Poaceae	Lolium multiflorum	5	gene-QYE76_002233, gene-QYE76_008565, gene-QYE76_008610 ... gene-QYE76_010254, gene-QYE76_068397
Poaceae	Oryza coarctata	2	Oco05G011910, Oco06G014520
Poaceae	Oryza sativa	3	LOC_Os03g19990.1, LOC_Os03g28980.1, LOC_Os12g24330.1
Poaceae	Paspalum vaginatum	3	gene-BS78_05G244700, gene-BS78_05G265800, gene-BS78_K297700
Poaceae	Puccinellia tenuiflora	4	Pt_Chr0401391, Pt_Chr0401407, Pt_Chr0404116, Pt_Chr0703511
Poaceae	Sporobolus alterniflorus	4	Chr16G007380, Chr17G006720, Chr26G000170, Chr31G004380
Poaceae	Thinopyrum elongatum	9	Tel3E01G844700, Tel5E01G025800, Tel5E01G888400 ... Tel5E01G888500, Tel6E01G109300, Tel6E01G109500, Tel6E01G109800, Tel6E01G113300, Tel7E01G748000
Poaceae	Triticum dicoccoides	12	gene_TRIDC3BG083400, gene_TRIDC4AG047760 ... gene_TRIDC4AG072200, gene_TRIDC5AG001880, gene_TRIDC5BG001630, gene_TRIDC5BG083370, gene_TRIDC6AG006960, gene_TRIDC6BG007070, gene_TRIDC6BG007170, gene_TRIDC6BG009850, gene_TRIDC7AG001000, gene_TRIDC7BG055080
Poaceae	Triticum aestivum	22	TraesCS3B02G577400.1, TraesCS3D02G516400.1 ... TraesCS4A02G124500.1, TraesCS4A02G484600.1, TraesCS4B02G180000.1.cds1, TraesCS5A02G011600.1, TraesCS5B02G009500.1, TraesCS5D02G016500.1, TraesCS5D02G550100.1, TraesCS6A02G057900.1, TraesCS6B02G056200.1, TraesCS6B02G056600.1, TraesCS6B02G057400.1, TraesCS6B02G082900.2, TraesCS6D02G047500.2, TraesCS6D02G047800.2, TraesCS6D02G058200.1, TraesCS7A02G010400.2, TraesCS7B02G344500.1, TraesCS7D02G010100.1, TraesCS7D02G434600.1, TraesCSU02G061800.1
Poaceae	Zea mays	1	Zm00001eb418440_P002
Poaceae	Zoysia japonica	1	nbis-gene-38693
Poaceae	Zoysia macrostachya	1	Zma_g17878
Portulacaceae	Portulaca oleracea	12	evm.TU.LG02.525, evm.TU.LG02.527, evm.TU.LG02.534 ... evm.TU.LG02.535, evm.TU.LG02.538, evm.TU.LG02.542, evm.TU.LG09.1768, evm.TU.LG09.1775, evm.TU.LG09.1778, evm.TU.LG09.1779, evm.TU.LG09.1782, evm.TU.LG09.1786
Posidoniaceae	Posidonia oceanica	4	gene.Posoc07g01380, gene.Posoc07g01390, gene.Posoc07g01450 ... gene.Posoc07g01460
Tamaricaceae	Tamarix chinensis	7	TC04G1422, TC04G1429, TC04G1437, TC04G1443, TC04G1451 ... TC04G1454, TC04G1456