Basic Information
Locus ID:
gene-BS78_05G239400
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Domain of unknown function DUF223
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 50318922 | 50322179 | - | gene-BS78_05G239400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.71 | 71,238.65 Da | 35.84 | 80.52 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04480 | RPA1_DBD_A_like | 1 | 63 | 5.57551E-17 | - |
| CDD | cd04476 | RPA1_DBD_C | 199 | 358 | 1.8093E-30 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 218 | 336 | 3.1E-17 | IPR013955 |
| Pfam | PF02721 | Domain of unknown function DUF223 | 1 | 68 | 2.5E-8 | IPR003871 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 1 | 68 | 2.06E-11 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 194 | 359 | 5.65E-30 | IPR012340 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 69 | 173 | 8.14E-6 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 1 | 62 | 1.6E-14 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 181 | 361 | 1.0E-30 | - |
| Gene3D | G3DSA:2.40.50.140 | - | 63 | 175 | 2.9E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 496 | - | - |
| Coils | Coil | Coil | 63 | 83 | - | - |
| Coils | Coil | Coil | 461 | 481 | - | - |
KEGG Pathway
KO Term:
Pathway:
ko03030 (DNA replication)
map03030 (DNA replication)
ko03420 (Nucleotide excision repair)
map03420 (Nucleotide excision repair)
ko03430 (Mismatch repair)
map03430 (Mismatch repair)
ko03440 (Homologous recombination)
map03440 (Homologous recombination)
ko03460 (Fanconi anemia pathway)
map03460 (Fanconi anemia pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G05642.1 | Nucleic acid-binding, OB-fold-like protein. | 0 |
| RefSeq | XP_039789813.1 | replication protein A 70 kDa DNA-binding subunit B-like [Panicum virgatum] | 0 |
| Q9SKI4 | Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA1A PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6PB54 | Rep_fac-A_C domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PMPSC011933 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology