Basic Information
Locus ID:
gene-BS78_05G236500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
In Between Ring fingers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 49985885 | 49993435 | + | gene-BS78_05G236500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 121,817.52 Da | 57.67 | 70.23 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 195 | 258 | 3.5E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 279 | 325 | 4.6E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 209 | 265 | 1.51E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 325 | 3.89E-17 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 254 | 523 | 2.2E-63 | - |
| SMART | SM00647 | ibrneu5 | 266 | 325 | 3.0E-6 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 194 | 258 | 9.1E-17 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 160 | 329 | 31.035181 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 307 | 316 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1060 | 1104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 359 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_039776505.1 | uncharacterized protein LOC120644036 isoform X1 [Panicum virgatum] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0PH47 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8KG163800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5291 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15853 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah019367 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g057020 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg15234, Sbi_jg22743, Sbi_jg41105, Sbi_jg56045 ... |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26528 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00006312, GOSA_00018897 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl01732, Sgl06886, Sgl34142, Sgl34375, Sgl39778 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013339, gene:ENSEOMG00000032646 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009770, CQ.Regalona.r1.3BG0009930 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30225680 |
| Apiaceae | Apium graveolens | 1 | Ag8G02046 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G008260 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708191 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1030.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | FtriNA30850 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G25540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006778m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g22670.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g018400.2N, BniB04g040660.2N, BniB04g040670.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2043 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2182 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g07770 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate07g21030, gene.Thate07g21040 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.512 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027409 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G01480 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1495, BH03.1674, CH03.1814 |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_6AG0531550, gene-QOZ80_6AG0531580 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_004414, gene-QYE76_004449 |
| Poaceae | Oryza coarctata | 2 | Oco17G002240, Oco18G002160 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g13610.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_02G145500, gene-BS78_05G204500 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702682 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G012270, Chr10G012280, Chr11G009890, Chr14G012100 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G304400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG029240, gene_TRIDC5BG030780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G179400.2, TraesCS5B02G177300.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb097890_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35503 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32354 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1410, evm.TU.LG07.1471 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g22870 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_15_RagTag.109, evm.TU.Scaffold_15_RagTag.110 ... |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2964, nbisL1-mrna-3903 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17441 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000013l.196, evm.TU.utg000001l.63 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004671 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10915, nbisL1-mrna-11659 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-23128, nbisL1-mrna-2827 |
| Salicaceae | Populus euphratica | 2 | populus_peu07036, populus_peu20994 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132616589, gene-LOC132641817 |
| Solanaceae | Solanum chilense | 1 | SOLCI005537500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007204, gene-LOC107020849 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19515_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G0234, TC04G0235 |
| Zosteraceae | Zostera marina | 2 | Zosma01g32020.v3.1, Zosma04g19140.v3.1 |