Basic Information
Locus ID:
gene-BS78_05G235500
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
FFAT motif binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 49906271 | 49916796 | + | gene-BS78_05G235500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 56,781.67 Da | 28.54 | 78.17 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 318 | 2.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 178 | 208 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 416 | 453 | 0.031 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 172 | 480 | 7.14E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 176 | 497 | 8.7E-55 | IPR015943 |
| SMART | SM00320 | WD40_4 | 322 | 365 | 9.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 453 | 5.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 272 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 277 | 318 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 169 | 208 | 0.011 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 176 | 217 | 11.009724 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 421 | 462 | 9.03805 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 440 | 454 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 28 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 91 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025828247.1 | uncharacterized protein LOC112903229 isoform X3 [Panicum hallii] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A811QSQ8 | WD_REPEATS_REGION domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS45509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_05G233100, gene-BS78_05G233200 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G024400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG071590, gene_TRIDC4AG071760 |
| Poaceae | Triticum aestivum | 4 | TraesCS2D02G464300.1, TraesCS4A02G475000.1 ... |