Basic Information
Locus ID:
gene-BS78_05G233200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
FFAT motif binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 49677789 | 49686643 | + | gene-BS78_05G233200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.80 | 59,347.05 Da | 29.18 | 78.46 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 323 | 350 | 7.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 423 | 460 | 4.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 315 | 530 | 5.27E-27 | IPR036322 |
| Gene3D | G3DSA:1.20.930.20 | - | 2 | 119 | 7.8E-18 | IPR036537 |
| Gene3D | G3DSA:2.130.10.10 | - | 318 | 531 | 1.3E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 419 | 460 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 369 | 414 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 308 | 350 | 0.053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 507 | 39.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 318 | 359 | 9.338814 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 210 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 254 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 286 | - | - |
| Coils | Coil | Coil | 65 | 85 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025828247.1 | uncharacterized protein LOC112903229 isoform X3 [Panicum hallii] | 0 |
| Q54YD8 | Coatomer subunit beta' OS=Dictyostelium discoideum OX=44689 GN=copb2 PE=3 SV=1 | 0 | |
| TrEMBL | A0A811QSQ8 | WD_REPEATS_REGION domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS45509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_05G233100, gene-BS78_05G233200 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G024400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG071590, gene_TRIDC4AG071760 |
| Poaceae | Triticum aestivum | 4 | TraesCS2D02G464300.1, TraesCS4A02G475000.1 ... |