Basic Information
Locus ID:
gene-BS78_05G233100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 49669913 | 49674681 | + | gene-BS78_05G233100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 63,738.58 Da | 37.20 | 86.98 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 340 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 259 | 285 | 0.045 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 254 | 545 | 1.26E-36 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 254 | 568 | 1.5E-47 | IPR015943 |
| Gene3D | G3DSA:1.20.930.20 | - | 3 | 120 | 2.2E-18 | IPR036537 |
| SMART | SM00320 | WD40_4 | 393 | 436 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 483 | 522 | 0.17 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 286 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 388 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 341 | 0.39 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 231 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_025828247.1 | uncharacterized protein LOC112903229 isoform X3 [Panicum hallii] | 0 |
| TrEMBL | A0A811QSQ8 | WD_REPEATS_REGION domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS45509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 5 | gene-BS78_05G233100, gene-BS78_05G233200 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G024400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG071590, gene_TRIDC4AG071760 |
| Poaceae | Triticum aestivum | 4 | TraesCS2D02G464300.1, TraesCS4A02G475000.1 ... |