Basic Information
Locus ID:
gene-BS78_05G226700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 48864146 | 48866320 | - | gene-BS78_05G226700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.87 | 60,038.26 Da | 62.12 | 90.99 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 210 | 247 | 6.5E-6 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 219 | 522 | 2.83E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 377 | 536 | 1.4E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 210 | 375 | 3.9E-28 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 351 | 375 | 7.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 419 | 443 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 305 | 328 | 31.0 | IPR003591 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_039777840.1 | leucine-rich repeat receptor-like kinase protein THICK TASSEL DWARF1 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9UJA8 | LRRNT_2 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26253 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology