halophFGD

Basic Information

Locus ID: gene-BS78_05G225600

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description: LRR-repeat protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	48790702	48792351	+	gene-BS78_05G225600

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.49	62,522.98 Da	61.99	83.33	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	12	47	7.0E-6	IPR001810
SUPERFAMILY	SSF52058	L domain-like	166	267	8.33E-5	-
SUPERFAMILY	SSF81383	F-box domain	10	61	6.54E-9	IPR036047
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	112	351	1.7E-5	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48400.2	-
RefSeq	XP_039851727.1	uncharacterized protein LOC120710124 [Panicum virgatum]
Swiss-Prot	Q56XW8	F-box/LRR-repeat protein At1g48400 OS=Arabidopsis thaliana OX=3702 GN=At1g48400 PE=2 SV=2
TrEMBL	A0A8T0S1J4	F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5NG445800 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.3AG0024140
Poaceae	Echinochloa crus-galli	12	AH04.2072, BH04.2135, BH04.2138, BH04.2139, BH04.2145 ... CH02.2882, CH02.2897, CH04.2464, CH04.2731, CH05.2892, CH09.2705, CH09.2710
Poaceae	Eleusine coracana subsp. coracana	15	gene-QOZ80_5AG0376310, gene-QOZ80_5BG0423530 ... gene-QOZ80_9AG0671040, gene-QOZ80_9AG0690870, gene-QOZ80_9AG0690880, gene-QOZ80_9AG0690890, gene-QOZ80_9AG0690920, gene-QOZ80_9AG0690960, gene-QOZ80_9AG0691020, gene-QOZ80_9BG0715300, gene-QOZ80_9BG0717160, gene-QOZ80_9BG0717180, gene-QOZ80_9BG0717190, gene-QOZ80_9BG0717200, gene-QOZ80_9BG0717310
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0110910.1 ... HORVU.MOREX.r3.3HG0313920.1.CDS1, HORVU.MOREX.r3.3HG0313940.1.CDS1, HORVU.MOREX.r3.3HG0313960.1.CDS1, HORVU.MOREX.r3.3HG0313970.1.CDS1
Poaceae	Lolium multiflorum	32	gene-QYE76_007082, gene-QYE76_009132, gene-QYE76_009145 ... gene-QYE76_028966, gene-QYE76_036423, gene-QYE76_036427, gene-QYE76_036428, gene-QYE76_036429, gene-QYE76_036430, gene-QYE76_038430, gene-QYE76_038432, gene-QYE76_038433, gene-QYE76_038601, gene-QYE76_038605, gene-QYE76_039894, gene-QYE76_039897, gene-QYE76_048047, gene-QYE76_049316, gene-QYE76_057696, gene-QYE76_057708, gene-QYE76_058077, gene-QYE76_058373, gene-QYE76_058394, gene-QYE76_059048, gene-QYE76_059050, gene-QYE76_060122, gene-QYE76_060933, gene-QYE76_065809, gene-QYE76_065814, gene-QYE76_065817, gene-QYE76_065822, gene-QYE76_065997
Poaceae	Oryza coarctata	4	Oco07G001790, Oco07G002090, Oco21G006700, Oco22G010260
Poaceae	Oryza sativa	13	LOC_Os02g28600.1, LOC_Os04g16160.1, LOC_Os05g46590.1 ... LOC_Os08g24190.1, LOC_Os10g27400.1, LOC_Os11g33190.1, LOC_Os11g33220.1, LOC_Os11g33250.1, LOC_Os11g42230.1, LOC_Os11g42240.1, LOC_Os11g42270.1, LOC_Os11g42280.1, LOC_Os11g42300.1
Poaceae	Paspalum vaginatum	7	gene-BS78_05G225600, gene-BS78_05G225700 ... gene-BS78_05G225900, gene-BS78_09G116100, gene-BS78_09G116300, gene-BS78_10G066500, gene-BS78_10G066600
Poaceae	Puccinellia tenuiflora	25	Pt_Chr0103367, Pt_Chr0103372, Pt_Chr0201689, Pt_Chr0201691 ... Pt_Chr0201692, Pt_Chr0201698, Pt_Chr0305502, Pt_Chr0404387, Pt_Chr0500107, Pt_Chr0500134, Pt_Chr0500208, Pt_Chr0601131, Pt_Chr0601132, Pt_Chr0601137, Pt_Chr0601140, Pt_Chr0601141, Pt_Chr0601142, Pt_Chr0601144, Pt_Chr0601145, Pt_Chr0601146, Pt_Chr0601147, Pt_Chr0700042, Pt_Chr0700227, Pt_Chr0700413, Pt_Chr0700416
Poaceae	Sporobolus alterniflorus	1	Chr16G004490
Poaceae	Thinopyrum elongatum	4	Tel1E01G132800, Tel2E01G165500, Tel3E01G720600 ... Tel3E01G721500
Poaceae	Triticum dicoccoides	5	gene_TRIDC3AG058470, gene_TRIDC3BG072530 ... gene_TRIDC3BG072570, gene_TRIDC3BG072620, gene_TRIDC7BG014460
Poaceae	Triticum aestivum	20	TraesCS1D02G064600.1.cds1, TraesCS1D02G064900.1 ... TraesCS2B02G089900.1.cds1, TraesCS2D02G073300.1.cds1, TraesCS3A02G411400.1.cds1, TraesCS3A02G455200.1, TraesCS3B02G444800.1.cds1, TraesCS3B02G494000.1, TraesCS3B02G494200.1.cds1, TraesCS3B02G494300.1, TraesCS3B02G494700.1, TraesCS3B02G494800.1.cds1, TraesCS3B02G495200.1.cds1, TraesCS3B02G495300.1.cds1, TraesCS3B02G495500.1, TraesCS3D02G405700.1.cds1, TraesCS3D02G447900.1.cds1, TraesCS3D02G448400.1.cds1, TraesCS3D02G448500.1, TraesCS7D02G020200.1.cds1