Basic Information
Locus ID:
gene-BS78_05G225300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 48774944 | 48779597 | + | gene-BS78_05G225300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 68,429.58 Da | 46.62 | 105.78 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 548 | 570 | 0.75 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 496 | 519 | 0.011 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 182 | 203 | 0.011 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 471 | 494 | 0.093 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 142 | 376 | 7.06E-40 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 47 | 8.24E-5 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 360 | 614 | 3.45E-32 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 457 | 614 | 1.5E-32 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 268 | 2.5E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 269 | 456 | 9.4E-38 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 522 | 547 | 52.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 260 | 284 | 7.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 440 | 470 | 91.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 414 | 439 | 0.028 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 336 | 361 | 0.088 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 207 | 232 | 0.59 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 497 | 521 | 0.025 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 285 | 309 | 290.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 548 | 573 | 1.5E-5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 310 | 335 | 0.023 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 234 | 259 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 574 | 599 | 15.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 156 | 181 | 0.0025 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 362 | 387 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 471 | 496 | 5.4E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 182 | 206 | 0.45 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 388 | 413 | 0.01 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 109 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15475.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_034607246.1 | F-box/LRR-repeat protein 4 [Setaria viridis] | 0 |
| Q9C5D2 | F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana OX=3702 GN=FBL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6Q2E2 | F-box/LRR-repeat protein 4 OS=Panicum miliaceum OX=4540 GN=C2845_PM17G13910 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12493 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4170 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30237970, pistato.v30238000 |
| Apiaceae | Apium graveolens | 1 | Ag1G01919 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G007540 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723004 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1400.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22647 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G15475.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024700m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g13700.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g073970.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1354 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g00110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.1413 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00026246, Pov_00026249, Pov_00034018 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G00114 |
| Poaceae | Echinochloa crus-galli | 5 | AH02.2463, BH04.2128, CH02.1614, CH03.2032, CH04.2458 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0690790, gene-QOZ80_9BG0717100 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0365590.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065994 |
| Poaceae | Oryza coarctata | 2 | Oco21G008990, Oco22G010240 |
| Poaceae | Oryza sativa | 3 | LOC_Os08g30980.1, LOC_Os10g05800.2, LOC_Os11g42160.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G225300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103366 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G014250, Chr31G008270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G244800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG020800, gene_TRIDC4BG024690 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G142500.3, TraesCS4D02G148000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115300_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-37587, nbis-gene-37589, nbis-gene-58391 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18228, Zma_g18230 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2060, evm.TU.LG14.358 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g34700 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.507 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1455 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-17342 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6229 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.912 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012570 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6308 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2065 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642061 |
| Solanaceae | Solanum chilense | 1 | SOLCI001496100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021070 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9380 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1503 |
| Zosteraceae | Zostera marina | 1 | Zosma04g26890.v3.1 |