Basic Information
Locus ID:
gene-BS78_05G218000
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 47648067 | 47649115 | - | gene-BS78_05G218000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 35,932.29 Da | 50.36 | 73.25 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 40 | 164 | 1.47483E-15 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 188 | 299 | 4.7E-19 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 171 | 301 | 3.14E-24 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 38 | 163 | 1.1E-16 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 38 | 167 | 1.1E-15 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 168 | 322 | 4.8E-33 | IPR011333 |
| SMART | SM00225 | BTB_4 | 195 | 301 | 8.1E-15 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 39 | 185 | 11.77402 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 195 | 265 | 14.314989 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.5 | - | 0 |
| RefSeq | XP_004980760.1 | BTB/POZ and MATH domain-containing protein 1 [Setaria italica] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZM09 | BTB domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G217300, gene-BS78_05G217900, gene-BS78_K169000 ... |