Basic Information
Locus ID:
gene-BS78_05G217900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 47633267 | 47634363 | - | gene-BS78_05G217900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 38,371.62 Da | 33.49 | 87.09 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 12 | 153 | 6.48651E-16 | IPR002083 |
| CDD | cd18280 | BTB_POZ_BPM_plant | 170 | 287 | 6.34505E-48 | - |
| Pfam | PF00651 | BTB/POZ domain | 175 | 288 | 2.8E-21 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 10 | 153 | 3.11E-23 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 164 | 290 | 8.44E-29 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 10 | 154 | 1.3E-18 | IPR008974 |
| Gene3D | G3DSA:1.25.40.420 | - | 289 | 353 | 8.2E-17 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 160 | 285 | 5.6E-34 | IPR011333 |
| SMART | SM00225 | BTB_4 | 184 | 290 | 3.2E-18 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 11 | 152 | 15.711723 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 184 | 254 | 16.010914 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_004980760.1 | BTB/POZ and MATH domain-containing protein 1 [Setaria italica] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5UMM9 | BTB/POZ and MATH domain-containing protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0024865 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G217300, gene-BS78_05G217900, gene-BS78_K169000 ... |