Basic Information
Locus ID:
gene-BS78_05G217300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 47586512 | 47587539 | - | gene-BS78_05G217300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 36,312.43 Da | 32.56 | 86.61 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 15 | 151 | 1.44821E-21 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 189 | 294 | 2.4E-6 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 13 | 158 | 3.27E-28 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 178 | 296 | 5.76E-15 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 266 | 329 | 3.3E-15 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 167 | 245 | 3.6E-14 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 14 | 154 | 5.8E-22 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 12 | 150 | 17.706144 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 196 | 257 | 9.661539 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_004980760.1 | BTB/POZ and MATH domain-containing protein 1 [Setaria italica] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A368S9I4 | BTB domain-containing protein (Fragment) OS=Setaria italica OX=4555 GN=SETIT_8G196600v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G217300, gene-BS78_05G217900, gene-BS78_K169000 ... |