Basic Information
Locus ID:
gene-BS78_05G215100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 47291662 | 47292825 | - | gene-BS78_05G215100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.73 | 41,359.92 Da | 40.04 | 80.39 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18280 | BTB_POZ_BPM_plant | 189 | 303 | 1.22595E-48 | - |
| CDD | cd00121 | MATH | 29 | 163 | 1.62617E-22 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 195 | 305 | 1.7E-23 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 178 | 305 | 8.83E-32 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 25 | 166 | 3.6E-27 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 175 | 301 | 2.2E-34 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 306 | 381 | 6.5E-16 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 28 | 166 | 4.5E-23 | IPR008974 |
| SMART | SM00225 | BTB_4 | 199 | 306 | 7.1E-23 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 199 | 262 | 17.33456 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 28 | 162 | 14.84236 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_039778517.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum virgatum] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9ULR7 | Speckle-type POZ protein-like protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26598 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0689740, gene-QOZ80_9BG0714590 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G215100 |