Basic Information
Locus ID:
gene-BS78_05G214200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 47251840 | 47252862 | + | gene-BS78_05G214200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 33,150.97 Da | 42.30 | 80.30 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 189 | 276 | 6.66472E-8 | IPR002083 |
| CDD | cd00121 | MATH | 30 | 148 | 3.80155E-20 | IPR002083 |
| Pfam | PF00917 | MATH domain | 49 | 148 | 5.8E-5 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 30 | 148 | 3.43E-24 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 186 | 273 | 6.21E-9 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 188 | 289 | 1.8E-7 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 29 | 152 | 1.0E-22 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 186 | 300 | 9.012514 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 29 | 153 | 14.484387 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039822900.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum virgatum] | 0 |
| TrEMBL | A0A8T0PAI2 | BTB/POZ and MATH domain-containing protein 4 OS=Panicum virgatum OX=38727 GN=PVAP13_8NG339500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G214200, gene-BS78_K288500 |