Basic Information
Locus ID:
gene-BS78_05G213900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 47229132 | 47234737 | + | gene-BS78_05G213900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 49,210.54 Da | 43.69 | 67.31 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 76 | 146 | 5.87313E-33 | - |
| CDD | cd12354 | RRM3_TIA1_like | 278 | 352 | 9.35674E-31 | - |
| CDD | cd12619 | RRM2_PUB1 | 160 | 234 | 5.79222E-48 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 76 | 142 | 5.0E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 280 | 346 | 1.3E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 161 | 231 | 1.1E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 58 | 151 | 1.61E-22 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 151 | 243 | 1.28E-29 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 270 | 361 | 1.18E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 155 | 1.7E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 259 | 356 | 2.0E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 156 | 258 | 2.9E-27 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 160 | 233 | 0.004 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 279 | 348 | 2.0 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 160 | 233 | 3.7E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 279 | 348 | 1.2E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 75 | 144 | 2.6E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 74 | 148 | 15.817916 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 278 | 352 | 16.073748 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 159 | 237 | 18.495615 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 274 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_039822338.1 | oligouridylate-binding protein 1-like [Panicum virgatum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A811Q4H3 | Oligouridylate-binding protein 1B OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS36731 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology