Basic Information
Locus ID:
gene-BS78_05G207900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 46273401 | 46277380 | - | gene-BS78_05G207900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 44,949.95 Da | 49.05 | 88.05 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 326 | 358 | 0.085 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 171 | 239 | 1.2E-4 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 95 | 368 | 1.48E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 9 | 366 | 2.1E-58 | IPR015943 |
| SMART | SM00320 | WD40_4 | 321 | 360 | 0.0025 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 184 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 91 | 129 | 400.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 317 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 187 | 226 | 66.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 52 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_002451112.1 | SEC12-like protein 2 [Sorghum bicolor] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | C5Y6B7 | ANAPC4_WD40 domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3005G184200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology