Basic Information
Locus ID:
gene-BS78_05G207800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 46270821 | 46273472 | + | gene-BS78_05G207800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 39,864.18 Da | 53.84 | 76.66 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 203 | 245 | 8.50485E-18 | - |
| Pfam | PF13639 | Ring finger domain | 202 | 245 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 198 | 251 | 2.78E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 175 | 251 | 1.1E-20 | IPR013083 |
| SMART | SM01197 | FANCL_C_2 | 199 | 252 | 0.0065 | - |
| SMART | SM00184 | ring_2 | 203 | 244 | 2.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 203 | 245 | 12.784338 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 44 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 380 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33565.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025827593.1 | E3 ubiquitin-protein ligase RING1-like [Panicum hallii] | 0 |
| Q9LX93 | E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6PHZ1 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM18G11030 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.1947, BH04.1964, CH04.2313 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0688760, gene-QOZ80_9BG0716390 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0546750.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066048 |
| Poaceae | Oryza coarctata | 2 | Oco21G008410, Oco22G009640 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g39640.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G207800 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G015180, Chr31G007630 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G126800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG006210, gene_TRIDC6BG008750 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G050800.1.cds1, TraesCS6B02G067200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb115110_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43137, nbis-gene-46115 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18186, Zma_g19050 |