Basic Information
Locus ID:
gene-BS78_05G201600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 45344437 | 45348614 | + | gene-BS78_05G201600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.54 | 35,508.10 Da | 40.95 | 90.13 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 29 | 77 | 1.63046E-15 | - |
| Pfam | PF12906 | RING-variant domain | 29 | 76 | 4.2E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 81 | 1.38E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 82 | 3.6E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 28 | 77 | 1.0E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 21 | 83 | 20.185003 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_025827277.1 | uncharacterized protein LOC112902422 [Panicum hallii] | 0 |
| TrEMBL | A0A2T7CQ56 | RING-CH-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G224500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology