Basic Information
Locus ID:
gene-BS78_05G197900
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 44896029 | 44897392 | + | gene-BS78_05G197900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.31 | 27,731.39 Da | 41.72 | 97.49 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00092 | von Willebrand factor type A domain | 68 | 236 | 4.1E-23 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 65 | 243 | 1.81E-28 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 67 | 245 | 4.6E-35 | IPR036465 |
| SMART | SM00327 | VWA_4 | 66 | 245 | 4.5E-19 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 68 | 243 | 18.688293 | IPR002035 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60710.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_004978827.1 | uncharacterized protein LOC101773048 [Setaria italica] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811QGD7 | VWFA domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS40037 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology