Basic Information
Locus ID:
gene-BS78_05G190100
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 43591310 | 43602206 | - | gene-BS78_05G190100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 69,284.06 Da | 42.59 | 91.81 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 395 | 460 | 2.8E-5 | IPR032838 |
| Pfam | PF13768 | von Willebrand factor type A domain | 60 | 205 | 7.8E-18 | IPR002035 |
| Pfam | PF04535 | Domain of unknown function (DUF588) | 484 | 613 | 4.6E-25 | IPR006702 |
| SUPERFAMILY | SSF53300 | vWA-like | 56 | 226 | 1.7E-25 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 59 | 230 | 6.8E-34 | IPR036465 |
| SMART | SM00327 | VWA_4 | 58 | 228 | 1.1E-15 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 60 | 229 | 14.761153 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 349 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_039777425.1 | uncharacterized protein LOC120644782 [Panicum virgatum] | 0 |
| C5XEK4 | CASP-like protein 4U1 OS=Sorghum bicolor OX=4558 GN=Sb03g029220 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0PL12 | VWFA domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8KG304700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology