Basic Information
Locus ID:
gene-BS78_05G176800
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 41653470 | 41655594 | + | gene-BS78_05G176800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.71 | 21,502.10 Da | 78.99 | 72.58 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 138 | 181 | 1.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 186 | 2.94E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 188 | 8.3E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 180 | 1.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 181 | 11.604098 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 115 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02340.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_004979561.1 | probable E3 ubiquitin-protein ligase RHY1A [Setaria italica] | 0 |
| Q6AVN2 | E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZNI7 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101759839 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16598, jg16599, jg35766 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30236250, pistato.v30239070 |
| Arecaceae | Cocos nucifera | 1 | COCNU_08G000600 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697316, gene-LOC120108756 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG11.982 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.1750, BH04.1754, CH04.2001 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0684210, gene-QOZ80_9BG0710320 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_066435 |
| Poaceae | Oryza coarctata | 2 | Oco21G007690, Oco22G008890 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g37230.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G176800, gene-BS78_05G177000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103171 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G005430, Chr17G004780 |
| Poaceae | Zea mays | 1 | Zm00001eb200510_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-43061, nbis-gene-43062 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18120, Zma_g18121 |