Basic Information
Locus ID:
gene-BS78_05G170700
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 40828479 | 40830182 | + | gene-BS78_05G170700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 54,954.10 Da | 44.44 | 88.45 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 101 | 439 | 3.1E-57 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 99 | 443 | 2.58E-54 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 339 | 410 | 4.32E-13 | IPR029070 |
| Gene3D | G3DSA:3.10.50.10 | - | 338 | 410 | 1.4E-83 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 117 | 438 | 1.4E-83 | - |
| SMART | SM00636 | 2g34 | 98 | 439 | 2.5E-68 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 98 | 456 | 55.697159 | IPR001223 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_004979247.1 | chitinase-3-like protein 1 [Setaria italica] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A1E5UN95 | Chitinase-3-like protein 1 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0024628 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology