Basic Information
Locus ID:
gene-BS78_05G169600
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 40746706 | 40749131 | + | gene-BS78_05G169600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 71,446.12 Da | 42.85 | 90.77 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 202 | 246 | 1.4678E-4 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 410 | 584 | 2.4E-28 | IPR000719 |
| Pfam | PF01476 | LysM domain | 204 | 247 | 1.5E-6 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 358 | 663 | 2.7E-52 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 449 | 676 | 5.8E-41 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 362 | 447 | 5.7E-11 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 192 | 261 | 1.9E-7 | IPR036779 |
| SMART | SM00257 | LysM_2 | 75 | 115 | 11.0 | IPR018392 |
| SMART | SM00257 | LysM_2 | 203 | 247 | 0.041 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 338 | 664 | 28.753515 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 134 | 182 | 9.678769 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 202 | 246 | 10.400594 | IPR018392 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_025827048.1 | lysM domain receptor-like kinase 4 [Panicum hallii] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7CPF6 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_8G205100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology