Basic Information
Locus ID:
gene-BS78_05G167200
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 40160856 | 40178698 | - | gene-BS78_05G167200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 137,115.88 Da | 46.90 | 100.13 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18052 | Rx N-terminal domain | 11 | 88 | 7.0E-12 | IPR041118 |
| Pfam | PF00069 | Protein kinase domain | 597 | 860 | 7.2E-42 | IPR000719 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 939 | 1200 | 4.4E-21 | IPR001245 |
| Pfam | PF00931 | NB-ARC domain | 146 | 294 | 1.0E-23 | IPR002182 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 937 | 1208 | 5.62E-43 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 382 | 541 | 1.87E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 135 | 306 | 6.24E-28 | IPR027417 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 574 | 867 | 9.98E-66 | IPR011009 |
| Gene3D | G3DSA:1.10.8.430 | - | 204 | 292 | 1.8E-10 | IPR042197 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 667 | 882 | 9.3E-46 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 575 | 666 | 1.1E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1012 | 1210 | 2.5E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 914 | 1010 | 1.8E-16 | - |
| Gene3D | G3DSA:1.20.5.4130 | - | 10 | 112 | 7.2E-14 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 393 | 557 | 1.5E-6 | IPR032675 |
| Gene3D | G3DSA:1.10.10.10 | - | 293 | 392 | 2.8E-8 | IPR036388 |
| SMART | SM00220 | serkin_6 | 935 | 1203 | 2.9E-10 | IPR000719 |
| SMART | SM00220 | serkin_6 | 593 | 860 | 3.4E-24 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 935 | 1203 | 21.121155 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 593 | 860 | 33.658016 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 713 | 725 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 599 | 622 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 93 | 129 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21240.1 | wall associated kinase 3. encodes a wall-associated kinase | 0 |
| RefSeq | XP_034568765.1 | serine/threonine-protein kinase-like protein At1g28390 [Setaria viridis] | 0 |
| F7J0N2 | Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6TU49 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_8G163900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | CH04.1869, CH05.2817 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0375270, gene-QOZ80_9AG0685500 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0325550.1.CDS1 |
| Poaceae | Oryza coarctata | 1 | Oco22G008390 |
| Poaceae | Oryza sativa | 8 | LOC_Os10g02360.1, LOC_Os10g05250.1, LOC_Os10g05400.1 ... |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_05G166100, gene-BS78_05G166500, gene-BS78_K038600 ... |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0600798 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G028150, Chr07G016140, Chr16G005860, Chr16G005880 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G153000, Tel7E01G297400 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC2BG007840, gene_TRIDC3AG072500 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS2B02G075200.1, TraesCS3B02G579200.1.cds1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb114030_P001, Zm00001eb114060_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44241 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18068, Zma_g18069 |