halophFGD

Basic Information

Locus ID: gene-BS78_05G160500

Species & Taxonomic ID: Paspalum vaginatum & 158149

Genome Assembly: GCA_026573395.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	39028858	39031195	+	gene-BS78_05G160500

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.51	52,252.97 Da	37.09	104.96	0.09

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF52047	RNI-like	157	414	5.73E-9	-
SUPERFAMILY	SSF81383	F-box domain	2	52	3.53E-5	IPR036047
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	87	438	3.6E-7	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_021309889.1	uncharacterized protein LOC8072232 isoform X2 [Sorghum bicolor]	0
TrEMBL	A0A811N5T6	F-box domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS11010 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	7	AH03.3902, AH03.3918, AH03.3919, BH03.4191, BH03.4208 ... CH07.287, Contig181.19
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_2AG0105390, gene-QOZ80_2BG0158860 ... gene-QOZ80_7BG0611060, gene-QOZ80_8BG0652150
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.2HG0112990.2, HORVU.MOREX.r3.5HG0531720.1 ... HORVU.MOREX.r3.2HG0119130.1.CDS1, HORVU.MOREX.r3.5HG0531850.1, HORVU.MOREX.r3.5HG0531930.1, HORVU.MOREX.r3.5HG0531960.1, HORVU.MOREX.r3.5HG0532100.1
Poaceae	Lolium multiflorum	13	gene-QYE76_001376, gene-QYE76_035379, gene-QYE76_038799 ... gene-QYE76_038947, gene-QYE76_039227, gene-QYE76_046284, gene-QYE76_046322, gene-QYE76_060244, gene-QYE76_060246, gene-QYE76_060247, gene-QYE76_060269, gene-QYE76_060272, gene-QYE76_060273
Poaceae	Oryza coarctata	6	Oco05G005810, Oco05G005830, Oco06G005980, Oco13G014200 ... Oco13G014520, Oco14G015090
Poaceae	Oryza sativa	2	LOC_Os07g45010.1, LOC_Os07g45050.1
Poaceae	Paspalum vaginatum	4	gene-BS78_02G373000, gene-BS78_05G160500, gene-BS78_K157300 ... gene-BS78_K157400
Poaceae	Puccinellia tenuiflora	20	Pt_Chr0105210, Pt_Chr0106234, Pt_Chr0106236, Pt_Chr0106238 ... Pt_Chr0106239, Pt_Chr0106242, Pt_Chr0106247, Pt_Chr0106249, Pt_Chr0106252, Pt_Chr0106261, Pt_Chr0106266, Pt_Chr0106277, Pt_Chr0106345, Pt_Chr0106378, Pt_Chr0201295, Pt_Chr0301122, Pt_Chr0304904, Pt_Chr0305530, Pt_Ctg00080, Pt_Ctg00084
Poaceae	Sporobolus alterniflorus	2	Chr0G002930, Chr27G016370
Poaceae	Thinopyrum elongatum	14	Tel2E01G236700, Tel2E01G236800, Tel2E01G288000 ... Tel2E01G288900, Tel2E01G972700, Tel5E01G818500, Tel5E01G819100, Tel5E01G820600, Tel5E01G820700, Tel5E01G821400, Tel5E01G821600, Tel5E01G822100, Tel5E01G822300, Tel5E01G824800
Poaceae	Triticum dicoccoides	16	gene_TRIDC2AG013140, gene_TRIDC2AG017730 ... gene_TRIDC2AG078710, gene_TRIDC2BG021490, gene_TRIDC4AG052070, gene_TRIDC4AG052220, gene_TRIDC4AG052290, gene_TRIDC5AG025170, gene_TRIDC5BG078190, gene_TRIDC5BG078340, gene_TRIDC5BG078380, gene_TRIDC5BG078500, gene_TRIDC5BG078510, gene_TRIDC5BG078530, gene_TRIDC5BG078540, gene_TRIDC7AG054630
Poaceae	Triticum aestivum	32	TraesCS2A02G142200.1, TraesCS2A02G586000.1 ... TraesCS2B02G128000.1, TraesCS2B02G128200.1, TraesCS2B02G167400.1, TraesCS2B02G597100.1, TraesCS2B02G597200.1, TraesCS2D02G110200.1, TraesCS2D02G110300.1, TraesCS2D02G600600.2, TraesCS4A02G343600.1, TraesCS4A02G344300.1, TraesCS4A02G346700.2, TraesCS4A02G347400.1, TraesCS4A02G348000.1, TraesCS5A02G150600.1, TraesCS5A02G407900.2, TraesCS5B02G412800.1, TraesCS5B02G526100.1, TraesCS5B02G526400.2, TraesCS5B02G527200.1, TraesCS5B02G530600.1, TraesCS5D02G155700.3, TraesCS5D02G417800.1, TraesCS5D02G525800.1, TraesCS5D02G526500.1, TraesCS5D02G526700.1, TraesCS5D02G527300.1, TraesCS5D02G527400.1, TraesCS5D02G529400.1, TraesCS7A02G393200.1, TraesCSU02G062100.2
Poaceae	Zoysia japonica	1	nbis-gene-5246