Basic Information
Locus ID:
gene-BS78_05G151300
Species & Taxonomic ID:
Paspalum vaginatum & 158149
Genome Assembly:
GCA_026573395.1
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 36962120 | 36970244 | - | gene-BS78_05G151300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 63,456.15 Da | 46.90 | 97.74 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 8.9E-22 | IPR041101 |
| Pfam | PF18511 | F-box | 2 | 41 | 1.0E-18 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 424 | 526 | 1.65E-5 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 22 | 400 | 7.46E-25 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 576 | 2.8E-158 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 6.0E-17 | - |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 8.8 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 690.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 600.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 4 | 45 | 0.0047 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 63.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 499 | 250.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 17.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_039825053.1 | transport inhibitor response 1-like protein Os11g0515500 [Panicum virgatum] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6Q2N1 | Transport inhibitor response 1-like protein OS=Panicum miliaceum OX=4540 GN=C2845_PM17G10000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology